HL_6SGC_029

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

6SGC|1|54|C|1676, 6SGC|1|54|A|1679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_029 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.2243

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6SGC|1|54|C|1675
6SGC|1|54|C|1676
6SGC|1|54|U|1677
6SGC|1|54|C|1678
6SGC|1|54|A|1679
6SGC|1|54|G|1680

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain a2

Ribosomal_L18e/L15P domain-containing protein

Chain b2

eL29

Chain o2

eL42