HL_6SGC_035

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_035 not in the Motif Atlas

Geometric match to HL_6PRV_002

Geometric discrepancy: 0.3557

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6SGC|1|54|U|2006
6SGC|1|54|G|2007
6SGC|1|54|U|2008
6SGC|1|54|A|2009
6SGC|1|54|A|2010
6SGC|1|54|C|2011
6SGC|1|54|A|2012
6SGC|1|54|A|2013

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain s2

uL10

Chain t2

Ribosomal protein L12