HL_6SGC_038

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

ACGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_038 not in the Motif Atlas

Homologous match to HL_5TBW_031

Geometric discrepancy: 0.1503

The information below is about HL_5TBW_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6SGC|1|54|A|2376
6SGC|1|54|C|2377
6SGC|1|54|G|2378
6SGC|1|54|A|2379
6SGC|1|54|G|2380
6SGC|1|54|A|2381
6SGC|1|54|A|2382
6SGC|1|54|C|2383
6SGC|1|54|U|2384

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain P2

uL22

Chain R2

eL19

Chain d2

eL31