HL_6SGC_046

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUUCGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_046 not in the Motif Atlas

Geometric match to HL_4V9F_039

Geometric discrepancy: 0.3415

The information below is about HL_4V9F_039

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6SGC|1|54|G|2664
6SGC|1|54|U|2665
6SGC|1|54|U|2666
6SGC|1|54|C|2667
6SGC|1|54|G|2668
6SGC|1|54|C|2669
6SGC|1|54|C|2670

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain R2

eL19

Chain p2

eL43