HL_6SGC_050

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

6SGC|1|54|C|2814

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_050 not in the Motif Atlas

Homologous match to HL_5TBW_042

Geometric discrepancy: 0.0675

The information below is about HL_5TBW_042

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6SGC|1|54|U|2810
6SGC|1|54|G|2811
6SGC|1|54|A|2812
6SGC|1|54|A|2813
6SGC|1|54|C|2814
6SGC|1|54|A|2815
6SGC|1|54|G|2816

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain R2

eL19