HL_6SGC_059

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6SGC|1|54|A|3876, 6SGC|1|54|A|3877, 6SGC|1|54|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_059 not in the Motif Atlas

Homologous match to HL_5TBW_051

Geometric discrepancy: 0.0743

The information below is about HL_5TBW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6SGC|1|54|G|3873
6SGC|1|54|G|3874
6SGC|1|54|G|3875
6SGC|1|54|A|3876
6SGC|1|54|A|3877
6SGC|1|54|C|3878
6SGC|1|54|G|3879
6SGC|1|54|G|3880
6SGC|1|54|G|3881
6SGC|1|54|C|3882

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain B2

uL3

Chain e2

eL32