HL_6SGC_062

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCGG

Length

4 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_062 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.3675

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6SGC|1|54|C|4137
6SGC|1|54|C|4138
6SGC|1|54|G|4146
6SGC|1|54|G|4147

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain G2

eL8

Chain Z2

60S ribosomal protein L27