HL_6SGC_067

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUCAGUACG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_067 not in the Motif Atlas

Homologous match to HL_8C3A_059

Geometric discrepancy: 0.211

The information below is about HL_8C3A_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34636.1

Basepair signature

cWW-cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6SGC|1|54|U|4301
6SGC|1|54|U|4302
6SGC|1|54|C|4303
6SGC|1|54|A|4304
6SGC|1|54|G|4305
6SGC|1|54|U|4306
6SGC|1|54|A|4307
6SGC|1|54|C|4308
6SGC|1|54|G|4309

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain Q2

eL18

Chain T2

eL21

Chain a2

Ribosomal_L18e/L15P domain-containing protein

Chain o2

eL42