HL_6SGC_071

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

6SGC|1|54|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_071 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.0813

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6SGC|1|54|A|4474
6SGC|1|54|G|4475
6SGC|1|54|C|4476
6SGC|1|54|A|4477
6SGC|1|54|G|4478
6SGC|1|54|A|4479
6SGC|1|54|A|4480
6SGC|1|54|U|4481

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain H2

uL6

Chain m2

eL40