HL_6SGC_075

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGAGGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_075 not in the Motif Atlas

Homologous match to HL_8C3A_067

Geometric discrepancy: 0.1565

The information below is about HL_8C3A_067

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6SGC|1|54|U|4646
6SGC|1|54|G|4647
6SGC|1|54|A|4648
6SGC|1|54|G|4649
6SGC|1|54|G|4650
6SGC|1|54|A|4651

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain R2

eL19

Chain U2

eL22

Chain d2

eL31