HL_6SGC_088
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGGCCGGUACAG
- Length
- 12 nucleotides
- Bulged bases
- 6SGC|1|A1|U|76
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SGC_088 not in the Motif Atlas
- Geometric match to HL_3SKL_006
- Geometric discrepancy: 0.3915
- The information below is about HL_3SKL_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47100.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6SGC|1|A1|C|69
6SGC|1|A1|G|70
6SGC|1|A1|G|71
6SGC|1|A1|C|72
6SGC|1|A1|C|73
6SGC|1|A1|G|74
6SGC|1|A1|G|75
6SGC|1|A1|U|76
6SGC|1|A1|A|77
6SGC|1|A1|C|78
6SGC|1|A1|A|79
6SGC|1|A1|G|80
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain H1
- 40S ribosomal protein S6
- Chain W2
- TRASH domain-containing protein
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