HL_6SGC_089

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

6SGC|1|A1|U|160, 6SGC|1|A1|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_089 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.1506

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6SGC|1|A1|G|156
6SGC|1|A1|U|157
6SGC|1|A1|A|158
6SGC|1|A1|A|159
6SGC|1|A1|U|160
6SGC|1|A1|U|161
6SGC|1|A1|C|162

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain H1

40S ribosomal protein S6

Chain Z1

eS24