HL_6SGC_090

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUUCGCGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_090 not in the Motif Atlas

Geometric match to HL_5D8H_002

Geometric discrepancy: 0.2737

The information below is about HL_5D8H_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6SGC|1|A1|C|196
6SGC|1|A1|U|197
6SGC|1|A1|U|198
6SGC|1|A1|C|199
6SGC|1|A1|G|200
6SGC|1|A1|C|201
6SGC|1|A1|G|202
6SGC|1|A1|G|203

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain J1

40S ribosomal protein S8