HL_6SGC_092

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCG

Length

3 nucleotides

Bulged bases

6SGC|1|A1|C|323

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_092 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2971

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6SGC|1|A1|C|322
6SGC|1|A1|C|323
6SGC|1|A1|G|329

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain H1

40S ribosomal protein S6

Chain W2

TRASH domain-containing protein