HL_6SGC_095
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 6SGC|1|A1|G|451
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SGC_095 not in the Motif Atlas
- Homologous match to HL_4V88_195
- Geometric discrepancy: 0.0757
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6SGC|1|A1|C|441
6SGC|1|A1|C|442
6SGC|1|A1|U|443
6SGC|1|A1|G|444
6SGC|1|A1|A|445
6SGC|1|A1|G|446
6SGC|1|A1|A|447
6SGC|1|A1|A|448
6SGC|1|A1|A|449
6SGC|1|A1|C|450
6SGC|1|A1|G|451
6SGC|1|A1|G|452
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain F1
- 40S ribosomal protein S4
- Chain H1
- 40S ribosomal protein S6
- Chain J1
- 40S ribosomal protein S8
- Chain Z1
- eS24
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