HL_6SGC_100

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_100 not in the Motif Atlas

Homologous match to HL_4V88_200

Geometric discrepancy: 0.0722

The information below is about HL_4V88_200

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6SGC|1|A1|C|618
6SGC|1|A1|A|619
6SGC|1|A1|G|620
6SGC|1|A1|C|621
6SGC|1|A1|C|622
6SGC|1|A1|G|623

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain Y1

uS12

Chain i1

polyA mRNA