HL_6SGC_105
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SGC_105 not in the Motif Atlas
- Homologous match to HL_4V88_206
- Geometric discrepancy: 0.105
- The information below is about HL_4V88_206
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
6SGC|1|A1|A|957
6SGC|1|A1|G|958
6SGC|1|A1|G|959
6SGC|1|A1|U|960
6SGC|1|A1|G|961
6SGC|1|A1|A|962
6SGC|1|A1|A|963
6SGC|1|A1|A|964
6SGC|1|A1|U|965
6SGC|1|A1|U|966
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain 54
- Large subunit ribosomal RNA; LSU rRNA
- Chain G1
- Ribosomal protein S5
- Chain P1
- uS11
- Chain i1
- polyA mRNA
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