HL_6SGC_108

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUCCCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_108 not in the Motif Atlas

Geometric match to HL_5TBW_044

Geometric discrepancy: 0.3671

The information below is about HL_5TBW_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.1

Basepair signature

cWW

Number of instances in this motif group

4

Unit IDs

6SGC|1|A1|U|1114
6SGC|1|A1|U|1115
6SGC|1|A1|C|1116
6SGC|1|A1|C|1117
6SGC|1|A1|C|1118
6SGC|1|A1|A|1119

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S3a

Chain c1

40S ribosomal protein S27