HL_6SGC_109

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_109 not in the Motif Atlas

Homologous match to HL_4V88_210

Geometric discrepancy: 0.0751

The information below is about HL_4V88_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6SGC|1|A1|G|1141
6SGC|1|A1|G|1142
6SGC|1|A1|A|1143
6SGC|1|A1|A|1144
6SGC|1|A1|A|1145
6SGC|1|A1|C|1146

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain D1

uS5

Chain X1

Ribosomal protein S15a

Chain b1

eS26