HL_6SGC_126

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AUCUCGUCUGAUCU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_126 not in the Motif Atlas

Homologous match to HL_8C3A_228

Geometric discrepancy: 0.1393

The information below is about HL_8C3A_228

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50688.1

Basepair signature

cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F

Number of instances in this motif group

2

Unit IDs

6SGC|1|74|A|32
6SGC|1|74|U|33
6SGC|1|74|C|34
6SGC|1|74|U|35
6SGC|1|74|C|36
6SGC|1|74|G|37
6SGC|1|74|U|38
6SGC|1|74|C|39
6SGC|1|74|U|40
6SGC|1|74|G|41
6SGC|1|74|A|42
6SGC|1|74|U|43
6SGC|1|74|C|44
6SGC|1|74|U|45

Current chains

Chain 74

5S ribosomal RNA

Nearby chains

Chain 54

Large subunit ribosomal RNA; LSU rRNA

Chain D2

60S ribosomal protein L5

Chain J2

Ribosomal protein L11