HL_6SJ6_039

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GGUUAACGCC

Length

10 nucleotides

Bulged bases

6SJ6|1|A|A|1764, 6SJ6|1|A|A|1765, 6SJ6|1|A|C|1766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SJ6_039 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.2134

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6SJ6|1|A|G|1760
6SJ6|1|A|G|1761
6SJ6|1|A|U|1762
6SJ6|1|A|U|1763
6SJ6|1|A|A|1764
6SJ6|1|A|A|1765
6SJ6|1|A|C|1766
6SJ6|1|A|G|1767
6SJ6|1|A|C|1768
6SJ6|1|A|C|1769

Current chains

Chain A

23S ribosomal RNA

Nearby chains