HL_6SJ6_041

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

UUUAUCAAAAA

Length

11 nucleotides

Bulged bases

6SJ6|1|A|A|1807, 6SJ6|1|A|U|1808, 6SJ6|1|A|C|1809, 6SJ6|1|A|A|1813

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SJ6_041 not in the Motif Atlas

Homologous match to HL_4WF9_043

Geometric discrepancy: 0.1251

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

6SJ6|1|A|U|1804
6SJ6|1|A|U|1805
6SJ6|1|A|U|1806
6SJ6|1|A|A|1807
6SJ6|1|A|U|1808
6SJ6|1|A|C|1809
6SJ6|1|A|A|1810
6SJ6|1|A|A|1811
6SJ6|1|A|A|1812
6SJ6|1|A|A|1813
6SJ6|1|A|A|1814

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain D

50S ribosomal protein L2