HL_6SJ6_049

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

6SJ6|1|A|A|2295, 6SJ6|1|A|C|2302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SJ6_049 not in the Motif Atlas

Homologous match to HL_4WF9_050

Geometric discrepancy: 0.1387

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6SJ6|1|A|C|2291
6SJ6|1|A|U|2292
6SJ6|1|A|A|2293
6SJ6|1|A|A|2294
6SJ6|1|A|A|2295
6SJ6|1|A|A|2296
6SJ6|1|A|G|2297
6SJ6|1|A|G|2298
6SJ6|1|A|U|2299
6SJ6|1|A|A|2300
6SJ6|1|A|A|2301
6SJ6|1|A|C|2302
6SJ6|1|A|G|2303

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L16

Chain Z

50S ribosomal protein L27