HL_6SJ6_050

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GUGUAAAGGC

Length

10 nucleotides

Bulged bases

6SJ6|1|A|U|2351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SJ6_050 not in the Motif Atlas

Geometric match to HL_6JXM_002

Geometric discrepancy: 0.3687

The information below is about HL_6JXM_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

6SJ6|1|A|G|2350
6SJ6|1|A|U|2351
6SJ6|1|A|G|2352
6SJ6|1|A|U|2353
6SJ6|1|A|A|2354
6SJ6|1|A|A|2355
6SJ6|1|A|A|2356
6SJ6|1|A|G|2357
6SJ6|1|A|G|2358
6SJ6|1|A|C|2359

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L16

Chain Z

50S ribosomal protein L27