HL_6SJ6_054

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

AGUUCACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SJ6_054 not in the Motif Atlas

Geometric match to HL_5TBW_012

Geometric discrepancy: 0.3518

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

6SJ6|1|A|A|2498
6SJ6|1|A|G|2499
6SJ6|1|A|U|2500
6SJ6|1|A|U|2501
6SJ6|1|A|C|2502
6SJ6|1|A|A|2503
6SJ6|1|A|C|2504
6SJ6|1|A|A|2505
6SJ6|1|A|U|2506

Current chains

Chain A

23S ribosomal RNA

Nearby chains