HL_6SJ6_076

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

6SJ6|1|A|A|354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SJ6_076 not in the Motif Atlas

Homologous match to HL_4WF9_010

Geometric discrepancy: 0.1665

The information below is about HL_4WF9_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

22

Unit IDs

6SJ6|1|A|C|348
6SJ6|1|A|U|349
6SJ6|1|A|G|350
6SJ6|1|A|G|351
6SJ6|1|A|A|352
6SJ6|1|A|A|353
6SJ6|1|A|A|354
6SJ6|1|A|G|355

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L24