HL_6SKF_037

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GGGCGAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_037 not in the Motif Atlas

Homologous match to HL_4V9F_008

Geometric discrepancy: 0.1215

The information below is about HL_4V9F_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.3

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

15

Unit IDs

6SKF|1|BA|G|237
6SKF|1|BA|G|238
6SKF|1|BA|G|239
6SKF|1|BA|C|240
6SKF|1|BA|G|241
6SKF|1|BA|A|242
6SKF|1|BA|C|243

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BO

50S ribosomal protein L15

Chain Bl

50S ribosomal protein L44e