HL_6SKF_039

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CUGGAACG

Length

8 nucleotides

Bulged bases

6SKF|1|BA|C|350

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_039 not in the Motif Atlas

Homologous match to HL_4V9F_010

Geometric discrepancy: 0.1163

The information below is about HL_4V9F_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6SKF|1|BA|C|344
6SKF|1|BA|U|345
6SKF|1|BA|G|346
6SKF|1|BA|G|347
6SKF|1|BA|A|348
6SKF|1|BA|A|349
6SKF|1|BA|C|350
6SKF|1|BA|G|351

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BX

50S ribosomal protein L24

Chain Bd

50S ribosomal protein L32e