HL_6SKF_041

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

6SKF|1|BA|G|368, 6SKF|1|BA|A|369, 6SKF|1|BA|A|370

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_041 not in the Motif Atlas

Homologous match to HL_4V9F_012

Geometric discrepancy: 0.1638

The information below is about HL_4V9F_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.4

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

16

Unit IDs

6SKF|1|BA|G|366
6SKF|1|BA|U|367
6SKF|1|BA|G|368
6SKF|1|BA|A|369
6SKF|1|BA|A|370
6SKF|1|BA|A|371
6SKF|1|BA|G|372
6SKF|1|BA|C|373
6SKF|1|BA|C|374

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BX

50S ribosomal protein L24

Chain Bd

50S ribosomal protein L32e