HL_6SKF_042

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GUCGGAUAUC

Length

10 nucleotides

Bulged bases

6SKF|1|BA|U|429

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_042 not in the Motif Atlas

Homologous match to HL_4V9F_013

Geometric discrepancy: 0.1028

The information below is about HL_4V9F_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91228.1

Basepair signature

cWW-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6SKF|1|BA|G|423
6SKF|1|BA|U|424
6SKF|1|BA|C|425
6SKF|1|BA|G|426
6SKF|1|BA|G|427
6SKF|1|BA|A|428
6SKF|1|BA|U|429
6SKF|1|BA|A|430
6SKF|1|BA|U|431
6SKF|1|BA|C|432

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BO

50S ribosomal protein L15

Chain BP

50S ribosomal protein L15e

Chain Bl

50S ribosomal protein L44e