HL_6SKF_048

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GGUCAAC

Length

7 nucleotides

Bulged bases

6SKF|1|BA|U|706, 6SKF|1|BA|A|708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_048 not in the Motif Atlas

Homologous match to HL_4V9F_019

Geometric discrepancy: 0.3002

The information below is about HL_4V9F_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42293.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

6SKF|1|BA|G|704
6SKF|1|BA|G|705
6SKF|1|BA|U|706
6SKF|1|BA|C|707
6SKF|1|BA|A|708
6SKF|1|BA|A|709
6SKF|1|BA|C|710

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L4