HL_6SKF_051

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

G(OMU)GAAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_051 not in the Motif Atlas

Geometric match to HL_5AOX_001

Geometric discrepancy: 0.3608

The information below is about HL_5AOX_001

Detailed Annotation

GNRA with tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6SKF|1|BA|G|767
6SKF|1|BA|OMU|768
6SKF|1|BA|G|769
6SKF|1|BA|A|770
6SKF|1|BA|A|771
6SKF|1|BA|A|772
6SKF|1|BA|G|773
6SKF|1|BA|C|774

Current chains

Chain BA

23S rRNA

Nearby chains

Chain Bl

50S ribosomal protein L44e