HL_6SKF_054

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

UGAAA(OMG)G

Length

7 nucleotides

Bulged bases

6SKF|1|BA|A|909

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_054 not in the Motif Atlas

Homologous match to HL_4V9F_025

Geometric discrepancy: 0.1287

The information below is about HL_4V9F_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92935.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

5

Unit IDs

6SKF|1|BA|U|907
6SKF|1|BA|G|908
6SKF|1|BA|A|909
6SKF|1|BA|A|910
6SKF|1|BA|A|911
6SKF|1|BA|OMG|912
6SKF|1|BA|G|913

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2