HL_6SKF_057

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

G(5MU)GUAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_057 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.238

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6SKF|1|BA|G|1084
6SKF|1|BA|5MU|1085
6SKF|1|BA|G|1086
6SKF|1|BA|U|1087
6SKF|1|BA|A|1088
6SKF|1|BA|A|1089
6SKF|1|BA|G|1090
6SKF|1|BA|C|1091

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BJ

50S ribosomal protein L10e