HL_6SKF_061

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_061 not in the Motif Atlas

Homologous match to HL_4V9F_034

Geometric discrepancy: 0.1624

The information below is about HL_4V9F_034

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

6SKF|1|BA|G|1417
6SKF|1|BA|U|1418
6SKF|1|BA|G|1419
6SKF|1|BA|A|1420
6SKF|1|BA|G|1421
6SKF|1|BA|A|1422
6SKF|1|BA|A|1423
6SKF|1|BA|U|1424
6SKF|1|BA|C|1425

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BS

50S ribosomal protein L19e

Chain BV

50S ribosomal protein L22

Chain Bc

50S ribosomal protein L31e