HL_6SKF_065

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

C(OMG)GCAACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_065 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3756

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6SKF|1|BA|C|1557
6SKF|1|BA|OMG|1558
6SKF|1|BA|G|1559
6SKF|1|BA|C|1560
6SKF|1|BA|A|1561
6SKF|1|BA|A|1562
6SKF|1|BA|C|1563
6SKF|1|BA|G|1564

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BM

50S ribosomal protein L14e

Chain Be

50S ribosomal protein L34e