HL_6SKF_067

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

C(4AC)GUAAUGG

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_067 not in the Motif Atlas

Geometric match to HL_4V90_032

Geometric discrepancy: 0.2943

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

6SKF|1|BA|C|1640
6SKF|1|BA|4AC|1641
6SKF|1|BA|G|1642
6SKF|1|BA|U|1643
6SKF|1|BA|A|1644
6SKF|1|BA|A|1645
6SKF|1|BA|U|1646
6SKF|1|BA|G|1647
6SKF|1|BA|G|1648

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BS

50S ribosomal protein L19e

Chain Bg

50S ribosomal protein L37Ae