HL_6SKF_071

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

G(OMU)GAGAAGC

Length

9 nucleotides

Bulged bases

6SKF|1|BA|A|1780

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_071 not in the Motif Atlas

Homologous match to HL_4V9F_043

Geometric discrepancy: 0.2716

The information below is about HL_4V9F_043

Detailed Annotation

GNRA with tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6SKF|1|BA|G|1775
6SKF|1|BA|OMU|1776
6SKF|1|BA|G|1777
6SKF|1|BA|A|1778
6SKF|1|BA|G|1779
6SKF|1|BA|A|1780
6SKF|1|BA|A|1781
6SKF|1|BA|G|1782
6SKF|1|BA|C|1783

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BS

50S ribosomal protein L19e