HL_6SKF_072

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6SKF|1|BA|U|1841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_072 not in the Motif Atlas

Homologous match to HL_4V9F_044

Geometric discrepancy: 0.134

The information below is about HL_4V9F_044

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

6SKF|1|BA|C|1839
6SKF|1|BA|U|1840
6SKF|1|BA|U|1841
6SKF|1|BA|C|1842
6SKF|1|BA|G|1843
6SKF|1|BA|G|1844

Current chains

Chain BA

23S rRNA

Nearby chains

Chain Aa

Small subunit ribosomal RNA; SSU rRNA

Chain Bg

50S ribosomal protein L37Ae

Chain Bk

LSU ribosomal protein L41E