HL_6SKF_077

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GGUACAAC

Length

8 nucleotides

Bulged bases

6SKF|1|BA|A|1991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_077 not in the Motif Atlas

Homologous match to HL_4V9F_049

Geometric discrepancy: 0.131

The information below is about HL_4V9F_049

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

6SKF|1|BA|G|1988
6SKF|1|BA|G|1989
6SKF|1|BA|U|1990
6SKF|1|BA|A|1991
6SKF|1|BA|C|1992
6SKF|1|BA|A|1993
6SKF|1|BA|A|1994
6SKF|1|BA|C|1995

Current chains

Chain BA

23S rRNA

Nearby chains

Chain Bl

50S ribosomal protein L44e