HL_6SKF_078

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

6SKF|1|BA|A|2026, 6SKF|1|BA|C|2027

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_078 not in the Motif Atlas

Geometric match to HL_9DFE_046

Geometric discrepancy: 0.3549

The information below is about HL_9DFE_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6SKF|1|BA|G|2023
6SKF|1|BA|U|2024
6SKF|1|BA|A|2025
6SKF|1|BA|A|2026
6SKF|1|BA|C|2027
6SKF|1|BA|U|2028
6SKF|1|BA|A|2029
6SKF|1|BA|U|2030
6SKF|1|BA|A|2031
6SKF|1|BA|A|2032
6SKF|1|BA|C|2033

Current chains

Chain BA

23S rRNA

Nearby chains

Chain Aa

Small subunit ribosomal RNA; SSU rRNA