HL_6SKF_079

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

UUAAAUG

Length

7 nucleotides

Bulged bases

6SKF|1|BA|U|2068

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_079 not in the Motif Atlas

Geometric match to HL_5T16_002

Geometric discrepancy: 0.2303

The information below is about HL_5T16_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

6SKF|1|BA|U|2063
6SKF|1|BA|U|2064
6SKF|1|BA|A|2065
6SKF|1|BA|A|2066
6SKF|1|BA|A|2067
6SKF|1|BA|U|2068
6SKF|1|BA|G|2069

Current chains

Chain BA

23S rRNA

Nearby chains

Chain Aa

Small subunit ribosomal RNA; SSU rRNA

Chain BL

50S ribosomal protein L14