HL_6SKF_081

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CUCCGGG

Length

7 nucleotides

Bulged bases

6SKF|1|BA|C|2258

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_081 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.2779

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6SKF|1|BA|C|2255
6SKF|1|BA|U|2256
6SKF|1|BA|C|2257
6SKF|1|BA|C|2258
6SKF|1|BA|G|2259
6SKF|1|BA|G|2260
6SKF|1|BA|G|2261

Current chains

Chain BA

23S rRNA

Nearby chains

Chain Ad

30S ribosomal protein S3Ae

Chain An

30S ribosomal protein S11