HL_6SKF_087

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

UAACAGAGG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_087 not in the Motif Atlas

Geometric match to HL_5J7L_185

Geometric discrepancy: 0.3285

The information below is about HL_5J7L_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

6SKF|1|BA|U|2459
6SKF|1|BA|A|2460
6SKF|1|BA|A|2461
6SKF|1|BA|C|2462
6SKF|1|BA|A|2463
6SKF|1|BA|G|2464
6SKF|1|BA|A|2465
6SKF|1|BA|G|2466
6SKF|1|BA|G|2467

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BO

50S ribosomal protein L15

Chain BU

50S ribosomal protein L21e