HL_6SKF_090

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

AGCCCA(4SU)AU

Length

9 nucleotides

Bulged bases

6SKF|1|BA|A|2580

QA status

Modified nucleotides: 4SU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_090 not in the Motif Atlas

Homologous match to HL_4V9F_062

Geometric discrepancy: 0.1627

The information below is about HL_4V9F_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6SKF|1|BA|A|2575
6SKF|1|BA|G|2576
6SKF|1|BA|C|2577
6SKF|1|BA|C|2578
6SKF|1|BA|C|2579
6SKF|1|BA|A|2580
6SKF|1|BA|4SU|2581
6SKF|1|BA|A|2582
6SKF|1|BA|U|2583

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BJ

50S ribosomal protein L10e

Chain Bj

50S ribosomal protein L40e