HL_6SKF_091

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

UGCAGCAG

Length

8 nucleotides

Bulged bases

6SKF|1|BA|G|2633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_091 not in the Motif Atlas

Homologous match to HL_4V9F_063

Geometric discrepancy: 0.3003

The information below is about HL_4V9F_063

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6SKF|1|BA|U|2632
6SKF|1|BA|G|2633
6SKF|1|BA|C|2634
6SKF|1|BA|A|2635
6SKF|1|BA|G|2636
6SKF|1|BA|C|2637
6SKF|1|BA|A|2638
6SKF|1|BA|G|2639

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BG

50S ribosomal protein L6

Chain Bj

50S ribosomal protein L40e