HL_6SKF_096

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6SKF|1|BA|G|2853, 6SKF|1|BA|C|2857

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_096 not in the Motif Atlas

Homologous match to HL_4V9F_068

Geometric discrepancy: 0.0973

The information below is about HL_4V9F_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

6SKF|1|BA|C|2847
6SKF|1|BA|U|2848
6SKF|1|BA|G|2849
6SKF|1|BA|A|2850
6SKF|1|BA|A|2851
6SKF|1|BA|A|2852
6SKF|1|BA|G|2853
6SKF|1|BA|C|2854
6SKF|1|BA|A|2855
6SKF|1|BA|U|2856
6SKF|1|BA|C|2857
6SKF|1|BA|U|2858
6SKF|1|BA|A|2859
6SKF|1|BA|A|2860
6SKF|1|BA|G|2861

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BG

50S ribosomal protein L6

Chain BK

50S ribosomal protein L13

Chain Bj

50S ribosomal protein L40e