HL_6SKF_109

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

(LHH)GGGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: LHH

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_109 not in the Motif Atlas

Homologous match to HL_4V9F_016

Geometric discrepancy: 0.511

The information below is about HL_4V9F_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6SKF|1|BA|LHH|526
6SKF|1|BA|G|527
6SKF|1|BA|G|528
6SKF|1|BA|G|529
6SKF|1|BA|A|530
6SKF|1|BA|G|531

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BV

50S ribosomal protein L22