HL_6SKF_110

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

(OMU)CUUGGAUCA

Length

10 nucleotides

Bulged bases

6SKF|1|BA|C|665

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_110 not in the Motif Atlas

Homologous match to HL_4V9F_018

Geometric discrepancy: 0.2731

The information below is about HL_4V9F_018

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

6SKF|1|BA|OMU|657
6SKF|1|BA|C|658
6SKF|1|BA|U|659
6SKF|1|BA|U|660
6SKF|1|BA|G|661
6SKF|1|BA|G|662
6SKF|1|BA|A|663
6SKF|1|BA|U|664
6SKF|1|BA|C|665
6SKF|1|BA|A|666

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BO

50S ribosomal protein L15

Chain Bd

50S ribosomal protein L32e