HL_6SKF_112

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

(A2M)CG(5MU)GCA(A2M)UU

Length

10 nucleotides

Bulged bases

6SKF|1|BA|5MU|875, 6SKF|1|BA|A2M|879, 6SKF|1|BA|U|880

QA status

Modified nucleotides: A2M, 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_112 not in the Motif Atlas

Homologous match to HL_4V9F_024

Geometric discrepancy: 0.1299

The information below is about HL_4V9F_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.1

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

11

Unit IDs

6SKF|1|BA|A2M|872
6SKF|1|BA|C|873
6SKF|1|BA|G|874
6SKF|1|BA|5MU|875
6SKF|1|BA|G|876
6SKF|1|BA|C|877
6SKF|1|BA|A|878
6SKF|1|BA|A2M|879
6SKF|1|BA|U|880
6SKF|1|BA|U|881

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BV

50S ribosomal protein L22

Chain Bh

50S ribosomal protein L37e